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 Forschungsbericht für das Jahr 2017

FRIAS Natur- und Ingenieurwissenschaften und Medizin (Fellows ab 2013)

Albertstr. 19
79104 Freiburg
Tel: +49(0)761-203 97404 Fax: +49(0)761-203 97323
Email info@frias.uni-freiburg.de
http://www.frias.uni-freiburg.de/


Einträge in der Rubrik "Who is Who"

Wissenschaftliche Publikationen

Originalarbeiten in wissenschaftlichen Fachzeitschriften:
  • Antonioli M, Ciccosanti F, Dengjel J, Fimia GM: Methods to Study the BECN1 Interactome in the Course of Autophagic Responses. Method Enzymol, 2017; 587: 429-445. : http://dx.doi.org/10.1016/bs.mie.2016.09.069
  • Bae J: Designing quantum information processing via structural physical approximations Rep Prog Phys, 2017; 80 (10). : http://iopscience.iop.org/article/10.1088/1361-6633/aa7d45
  • Barcellona P, Safari H, Salam A, Buhmann SY: Enhanced Chiral Discriminatory van der Waals Interactions Mediated by Chiral Surfaces. Phys Rev Lett, 2017; 118 (19): 193401-193401. : http://dx.doi.org/10.1103/PhysRevLett.118.193401
  • Barreiro K, Holthofer H: Urinary extracellular vesicles. A promising shortcut to novel biomarker discoveries. Cell Tissue Res, 2017. : http://dx.doi.org/10.1007/s00441-017-2621-0
  • Brausemann A, Gemmecker S, Koschmieder J, Ghisla S, Beyer P, Einsle O: Structure of phytoene desaturase provides insights into herbicide binding and reaction mechanisms involved in carotene desaturation Structure, 2017; 25: 1222-1232.
  • Daniels IN, Wang Z, Laird BB: Dielectric properties of organic solvents in an electric field J Phys Chem C, 2017; 121: 1025-1031.
  • Dantas JM, Brausemann A, Einsle O, Salgueiro CA: NMR studies of the interaction between inner membrane-associated and periplasmic cytochromes from Geobacter sulfurreducens Febs Lett, 2017; 591: 1657-1666.
  • Decker EL, Alder A, Hunn S, Ferguson J, Lehtonen MT, Scheler B, Kerres KL, Wiedemann G, Safavi-Rizi V, Nordzieke S, Balakrishna A, Baz L, Avalos J, Valkonen JP, Reski R, Al-Babili S: Strigolactone biosynthesis is evolutionarily conserved, regulated by phosphate starvation and contributes to resistance against phytopathogenic fungi in a moss, Physcomitrella patens. New Phytol, 2017. : http://dx.doi.org/10.1111/nph.14506
  • Diedrich B, Rigbolt KT, Roring M, Herr R, Kaeser-Pebernard S, Gretzmeier C, Murphy RF, Brummer T, Dengjel J: Discrete cytosolic macromolecular BRAF complexes exhibit distinct activities and composition. Embo J, 2017; 36 (5): 646-663. : http://dx.doi.org/10.15252/embj.201694732
  • Djurdjevic I, Einsle O, Decamps L: Nitrogenase cofactor: Inspiration for model chemistry Chem. As. J., 2017; 12: 1447-1455.
  • Dumit VI, Zerbes RM, Kaeser-Pebernard S, Rackiewicz M, Wall MT, Gretzmeier C, Kuttner V, van der Laan M, Braun RJ, Dengjel J: Respiratory status determines the effect of emodin on cell viability. Oncotarget, 2017. : http://dx.doi.org/10.18632/oncotarget.16396
  • Eisenberg T, Abdellatif M, Zimmermann A, Schroeder S, Pendl T, Harger A, Stekovic S, Schipke J, Magnes C, Schmidt A, Ruckenstuhl C, Dammbrueck C, Gross AS, Herbst V, Carmona-Gutierrez D, Pietrocola F, Pieber TR, Sigrist SJ, Linke WA, Muhlfeld C, Sadoshima J, Dengjel J, Kiechl S, Kroemer G, Sedej S, Madeo F: Dietary spermidine for lowering high blood pressure. Autophagy, 2017; 13 (4): 767-769. : http://dx.doi.org/10.1080/15548627.2017.1280225
  • Garai Z, Pribulla T, Hamb´alek L, Kundra E, Vaˇnko M, Raetz S, Seeliger M, Marka C, Gilbert H: Affordable echelle spectroscopy of the eccentric HAT-P-2, WASP-14 and XO-3 planetary systems with a sub-meter-class telescope Astronomical Notes, 2017; 338: 35-48.
  • Gretzmeier C, Eiselein S, Johnson GR, Engelke R, Nowag H, Zarei M, Kuttner V, Becker AC, Rigbolt KTG, Hoyer-Hansen M, Andersen JS, Munz C, Murphy RF, Dengjel J: Degradation of protein translation machinery by amino acid starvation-induced macroautophagy. Autophagy, 2017: 1064-1075. : http://dx.doi.org/10.1080/15548627.2016.1274485
  • Haase D, Hermann B, Einsle O, Simon J: Epsilonproteobacterial hydroxylamine oxidoreductase (εHao): Characterization of a 'missing link' in the multihaem cytochrome c family Mol Microbiol, 2017; 105: 127-138.
  • Hau M, Zenk F, Ganesan A, Iovino N, Jung M: Cellular analysis of the action of epigenetics drugs and probes. Epigenetics, 2017: 0-0. : http://dx.doi.org/10.1080/15592294.2016.1274472
  • Hügle M, Lucas X, Ostrovskyi D, Regenass P, Gerhardt S, Einsle O, Hau M, Jung M, Breit B, Günther S, Wohlwend D: Beyond the BET family: targeting CBP/p300 with 4-acyl pyrroles Angew Chem Int Edit, 2017; 56: 12476-12480.
  • Ilcu L, Röther W, Birke J, Brausemann A, Einsle O, Jendrossek D: Structural and functional analysis of latex clearing protein (Lcp) provides insight into the enzymatic cleavage of rubber Sci Rep-uk, 2017; 7: 6179.
  • Johnson GR, Kangas JD, Dovzhenko A, Trojok R, Voigt K, Majarian TD, Palme K, Murphy RF: A method for characterizing phenotypic changes in highly variable cell populations and its application to high content screening of Arabidopsis thaliana protoplasts. Cytom Part A, 2017; 91 (4): 326-335. : http://dx.doi.org/10.1002/cyto.a.23067
  • Klatt J, Barcellona P, Bennett R, Bokareva OS, Feth H, Rasch A, Reith P, Buhmann SY: Strong van der Waals Adhesion of a Polymer Film on Rough Substrates. Langmuir, 2017. : http://dx.doi.org/10.1021/acs.langmuir.7b01381
  • Krones E, Eller K, Pollheimer MJ, Racedo S, Kirsch AH, Frauscher B, Wahlstrom A, Stahlman M, Trauner M, Grahammer F, Huber TB, Wagner K, Rosenkranz AR, Marschall HU, Fickert P: NorUrsodeoxycholic acid ameliorates cholemic nephropathy in bile duct ligated mice. J Hepatol, 2017. : http://dx.doi.org/10.1016/j.jhep.2017.02.019
  • Lacour F, Vezin E, Bentzinger CF, Sincennes MC, Giordani L, Ferry A, Mitchell R, Patel K, Rudnicki MA, Chaboissier MC, Chassot AA, Le Grand F: R-spondin1 Controls Muscle Cell Fusion through Dual Regulation of Antagonistic Wnt Signaling Pathways. Cell Rep, 2017; 18 (10): 2320-2330. : http://dx.doi.org/10.1016/j.celrep.2017.02.036
  • Lee HW, Khan SQ, Khaliqdina S, Altintas MM, Grahammer F, Zhao JL, Koh KH, Tardi NJ, Faridi MH, Geraghty T, Cimbaluk DJ, Susztak K, Moita LF, Baltimore D, Tharaux PL, Huber TB, Kretzler M, Bitzer M, Reiser J, Gupta V: Absence of miR-146a in Podocytes Increases Risk of Diabetic Glomerulopathy via Up-regulation of ErbB4 and Notch-1. J Biol Chem, 2017; 292 (2): 732-747. : http://dx.doi.org/10.1074/jbc.M116.753822
  • Li C, Maillet I, Mackowiak C, Viala C, Di Padova F, Li M, Togbe D, Quesniaux V, Lai Y, Ryffel B: Experimental atopic dermatitis depends on IL-33R signaling via MyD88 in dendritic cells. Cell Death Dis, 2017; 8 (4): e2735-e2735. : http://dx.doi.org/10.1038/cddis.2017.90
  • Mironova V, Teale W, Shahriari M, Dawson J, Palme K: The Systems Biology of Auxin in Developing Embryos. Trends Plant Sci, 2017; 22 (3): 225-235. : http://dx.doi.org/10.1016/j.tplants.2016.11.010
  • Mueller SJ, Hoernstein SN, Reski R: Approaches to Characterize Organelle, Compartment, or Structure Purity. Methods Mol Biol, 2017; 1511: 13-28. : http://dx.doi.org/10.1007/978-1-4939-6533-5_2
  • Nkuipou-Kenfack E, Schanstra JP, Bajwa S, Pejchinovski M, Vinel C, Dray C, Valet P, Bascands JL, Vlahou A, Koeck T, Borries M, Busch H, Bechtel-Walz W, Huber TB, Rudolph KL, Pich A, Mischak H, Zurbig P: The use of urinary proteomics in the assessment of suitability of mouse models for ageing. Plos One, 2017; 12 (2): e0166875-e0166875. : http://dx.doi.org/10.1371/journal.pone.0166875
  • Ortega-Moo C, Duran R, Herrera B, Gutierrez-Oliva S, Toro-Labbe A, Vargas R: Study of antiradical mechanisms with dihydroxybenzenes using reaction force and reaction electronic flux. Phys Chem Chem Phys, 2017. : http://dx.doi.org/10.1039/c7cp01304c
  • Rees JA, Björnsson R, Kowalska JK, Lima FA, Schlesier J, Sippel D, Weyhermüller T, Einsle O, Kovacs JA, DeBeer S: Comparative electronic structures of nitrogenase FeMoco and FeVco Dalton T, 2017; 46: 2445-2455.
  • Renault H, Alber A, Horst NA, Basilio Lopes A, Fich EA, Kriegshauser L, Wiedemann G, Ullmann P, Herrgott L, Erhardt M, Pineau E, Ehlting J, Schmitt M, Rose JK, Reski R, Werck-Reichhart D: A phenol-enriched cuticle is ancestral to lignin evolution in land plants. Nat Commun, 2017; 8: 14713-14713. : http://dx.doi.org/10.1038/ncomms14713
  • Saad K, Theis S, Otto A, Luke G, Patel K: Detailed expression profile of the six Glypicans and their modifying enzyme, Notum during chick limb and feather development. Gene, 2017; 610: 71-79. : http://dx.doi.org/10.1016/j.gene.2017.02.012
  • Schell C, Rogg M, Suhm M, Helmstadter M, Sellung D, Yasuda-Yamahara M, Kretz O, Kuttner V, Suleiman H, Kollipara L, Zahedi RP, Sickmann A, Eimer S, Shaw AS, Kramer-Zucker A, Hirano-Kobayashi M, Abe T, Aizawa S, Grahammer F, Hartleben B, Dengjel J, Huber TB: The FERM protein EPB41L5 regulates actomyosin contractility and focal adhesion formation to maintain the kidney filtration barrier. P Natl Acad Sci Usa, 2017. : http://dx.doi.org/10.1073/pnas.1617004114
  • Schiedel M, Herp D, Hammelmann S, Swyter S, Lehotzky A, Robaa D, Olah J, Ovadi J, Sippl W, Jung M: Chemically Induced Degradation of Sirtuin 2 (Sirt2) by a Proteolysis Targeting Chimera (PROTAC) Based on Sirtuin Rearranging Ligands (SirReals). J Med Chem, 2017. : http://dx.doi.org/10.1021/acs.jmedchem.6b01872
  • Siegrist J, Netzer J, Mordhorst S, Karst L, Gerhardt S, Einsle O, Richter M, Andexer JN: Functional and structural characterisation of a bacterial O-methyltransferase and factors determining regioselectivity Febs Lett, 2017; 591: 312-321.
  • Sippel D, Einsle O: The structure of vanadium nitrogenase reveals an unusual bridging ligand Nature Chem. Biol., 2017; 13: 956-960.
  • Sippel D, Schlesier J, Rohde M, Trncik C, Decamps L, Djurdjevic I, Spatzal T, Andrade SLA, Einsle O: Production and isolation of vanadium nitrogenase from Azotobacter vinelandii by molybdenum depletion J Biol Inorg Chem, 2017; 22: 161-168.
  • Vaˇnko M, Torres G, Hamb´alek L, Pribulla T, Buchhave LA, Budaj J, Dubovsk´y P, Garai Z, Ginski C, Grankin K, Komˇz´ık R, Krushevska V, Kundra E, Marka C, Mugrauer M, Neuhäuser R, Ohlert J, Parimucha ˇS, Perdelwitz V, Raetz S, Shugarov SY: On the nature of the candidate T-Tauri star V501 Aurigae MNRAS, 2017; 467.
  • Weinberg F, Reischmann N, Fauth L, Taromi S, Mastroianni J, Kohler M, Halbach S, Becker AC, Deng N, Schmitz T, Uhl FM, Herbener N, Riedel B, Beier F, Swarbrick A, Lassmann S, Dengjel J, Zeiser R, Brummer T: The Atypical Kinase RIOK1 Promotes Tumor Growth and Invasive Behavior. EBioMedicine, 2017. : http://dx.doi.org/10.1016/j.ebiom.2017.04.015
  • Xie Y, Harsan LA, Bienert T, Kirch RD, von Elverfeldt D, Hofmann UG: Qualitative and quantitative evaluation of in vivo SD-OCT measurement of rat brain. Biomed Opt Express, 2017; 8 (2): 593-607. : http://dx.doi.org/10.1364/BOE.8.000593
  • Zierep PF, Padilla N, Yonchev DG, Telukunta KK, Klementz D, Gunther S: SeMPI: a genome-based secondary metabolite prediction and identification web server. Nucleic Acids Res, 2017. : http://dx.doi.org/10.1093/nar/gkx289
Buchbeiträge:
  • Gessel N van, Lang D, Reski R: Genetics and Genomics of Physcomitrella patens In: Plant Cell Biology Springer, 2017; 1-32 (The Plant Sciences 20).

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