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 Research Report for 2010

Abteilung für Mathematische Stochastik

Prof. Dr. Peter Pfaffelhuber

Eckerstr. 1
79104 Freiburg
Tel: 0761/203-5664 Fax: 0761/203-5661
Email sekretariat@stochastik.uni-freiburg.de
http://www.stochastik.uni-freiburg.de/


Scientific Employees

  • Prof. Dr. Peter Pfaffelhuber, Leitung (m/w)
  • Dr. Andrej Depperschmidt, Postdoc (m/w)
  • Franz Baumdicker, Doktorand (m/w)
  • Cornelia Borck, Doktorand (m/w)
  • PD Dr. Dr. Heinz Weisshaupt, Postdoc (m/w)
Entries in "Who is Who"

Main Research

  • Stochastik, Biomathematik

Scientific and Research Projects


  • Bacterial population genomics.
    • Project Manager: Prof. Dr. Peter Pfaffelhuber
    • Start/End of project: 01.05.2008 until 31.12.2015
    • Project Details
  • Muller's ratchet
    • Project Manager: Prof. Dr. Peter Pfaffelhuber
    • Start/End of project: 01.04.2008 until 31.12.2014
    • Project Details
  • Quorum sensing in bacteria
    • Project Manager: Prof. Dr. Peter Pfaffelhuber
    • Start/End of project: 01.04.2008 until 31.12.2015
    • Project Details
  • Spatial chemical reaction networks.
    • Project Manager: Prof. Dr. Peter Pfaffelhuber
    • Start/End of project: 2010 until 2011
    • Project Details
  • The signature of strong positive selection in natural populations.
    • Project Manager: Prof. Dr. Peter Pfaffelhuber
    • Start/End of project: since 2006
    • Project Details
  • Tree-valued stochastic processes
    • Project Manager: Prof. Dr. Peter Pfaffelhuber
    • Start/End of project: since 2005
    • Project Details

Scientific publications

Journal Articles:
  • Baumdicker F, Hess W R, Pfaffelhuber P: The diversity of a distributed genome in bacterial populations. Ann Appl Probab, 2010; 20 (5): 1567-1606. (download: http://arxiv.org/abs/0907.2572)
  • Best K, Pfaffelhuber P: The Aldous-Shields model revisited (with application to cellular ageing). Electron Commun Prob, 2010; 15 (43): 475-488. : http://arxiv.org/abs/1004.1581
  • Depperschmidt A, Pfaffelhuber P: Asymptotics of a Brownian ratchet for Protein Translocation. Stochastic Processes and Their Applications, 2010; 120: 901-925. : http://arxiv.org/abs/0904.2276v2 (download: http://arxiv.org/abs/0904.2276v2)
  • Haubold B, Pfaffelhuber P, Lynch M: mlRho - A program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes. Mol Ecol, 2010; 19 Suppl. 1: 274-284.

Special Scientific Activities

Preise / Ehrungen:
  • Franz Baumdicker: Ferdinand-von-Lindemann-Preis 2010, für seine Diplomarbeit "Mathematical population genomics of bacteria: A neutral theory", die ein neues mathematisches Modell vorstellt, Universität Freiburg, 01.07.2010.
Invited Speech:
  • Cornelia Borck: Linkage disequilibrium under soft sweeps (invited speech), Mind the gap: Joining empirical and theoretical population genetics, Max-Planck-Institut für Evolutionsbiologie, Plön, 23.09.2010.
  • Dr. Andrej Depperschmidt: Random walk in random environment performed by ancestral lines of the discrete contact process (invited speech), Trimester-Seminar, Hausdorff Research Institute for Mathematics, Bonn, 14.12.2010.
  • Dr. Andrej Depperschmidt: Tree-valued Fleming-Viot process with mutation and selection (invited speech), Probability Seminar, University of Duisburg-Essen, 07.12.2010.
  • Dr. Andrej Depperschmidt: Tree-valued Fleming-Viot process with mutation and selection (invited speech), Oberseminar Stochastik, University of Bonn, 02.12.2010.
  • Dr. Andrej Depperschmidt: Tree-valued Fleming-Viot process with mutation and selection (invited speech), Workshop on "Limit behaviour of random graphs and related processes", University of Freiburg, 30.09.2010.
  • Dr. Andrej Depperschmidt: Tree-valued Fleming-Viot process with mutation and selection (invited speech), Workshop "Mind the Gap", Max Planck Institute Plön, 22.09.2010.
  • Dr. Andrej Depperschmidt: Modelling protein translocation: A Brownian ratchet (invited speech), Rhein-Main Kolloquium, University of Mainz, 02.07.2010.
  • Dr. Andrej Depperschmidt: Modelling protein translocation: A Brownian ratchet (invited speech), 9th German Open Conference on Probability and Statistics, Leipzig, 04.03.2010.
  • Prof. Dr. Peter Pfaffelhuber: The evolution of genealogical trees und neutrality (invited speech), Probability Seminar, Bonn, 25.11.2010.
  • Prof. Dr. Peter Pfaffelhuber: New models in population genetics (invited speech), Mind the gap: Joining empirical and theoretical population genetics., Max-Planck-Institut Plön, 24.09.2010.
  • Prof. Dr. Peter Pfaffelhuber: The infinitely many genes model for genomic diversity in bacteria. (invited speech), IMS Conference (annual meeting), Goeteborg, 10.08.2010.
  • Prof. Dr. Peter Pfaffelhuber: The Brownian ratchet for protein translocation. (invited speech), Probability Seminar, Erlangen, 20.06.2010.
  • Prof. Dr. Peter Pfaffelhuber: Spatial aspects of multiscale chemical reaction networks. (invited speech), BIRS workshop, Banff (Canada), 18.01.2010.
Veranstaltung:
  • Prof. Dr. Bernhard Haubold, Prof. Dr. Peter Pfaffelhuber: Mind the gap: Joining empirical and theoretical population genetics, Workshop funded by the VW foundation, Max-Planck-Institut für Evolutionsbiologie, Plön, 23.09.2010 bis 24.09.2010.
  • Prof. Dr. Ludger Rüschendorf, Prof. Dr. Peter Pfaffelhuber: Limit behaviour of random graphs and related processes, Freiburg, 30.09.2010 bis 01.10.2010.
  • Prof. Dr. Peter Pfaffelhuber: Session organizer "Stochastics in the Natural Sciences", Stochastiktage, German Open Conference on Probability and Statistics, Leipzig, 02.03.2010 bis 05.03.2010.
  • Prof. Dr. Peter Pfaffelhuber, Prof. Dr. Ludger Rüschendorf: Limit behavior of random graphs and related processes, Workshop, Uni Freiburg, 30.09.2010 bis 01.10.2010.
Gremien:
  • Prof. Dr. Peter Pfaffelhuber: Habilitationskommission Heinz Weisshaupt, 01.07.2010 bis 01.02.2011.
  • Prof. Dr. Peter Pfaffelhuber: Habilitationskommission Markus Junker, 01.06.2010 bis 01.02.2011.

Scientific Dissertations

Professoral Dissertations
  • Weisshaupt H: Three aspects of weak structures, 2010.
Degree Dissertations
  • Baumdicker F: Mathematical population genomics of bacteria: A neutral theory (Supervisor Prof. Dr. Peter Pfaffelhuber), 2010.
State Examinations
  • Jenkner C: Grenzwertaussagen von Verzweigungsprozessen mit Immigration (Supervisor Prof. Dr. Peter Pfaffelhuber), 2010.