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 Forschungsbericht für das Jahr 2010

Wissenschaftliche Publikationen

Originalarbeiten in wissenschaftlichen Fachzeitschriften:
  • Benkner S, Arbona A, Berti G, Chiarini A, Dunlop R, Engelbrecht G, Frangi AF, Friedrich CM, Hanser S, Hasselmeyer P, Hose RD, Iavindrasana J, Kohler M, Lo Iacono L, Lonsdale G, Meyer R, Moore B, Rajasekaran H, Summers PE, Wohrer A, Wood S: @neurIST: Infrastructure for Advanced Disease Management Through Integration of Heterogeneous Data, Computing, and Complex Processing Services. Ieee T Inf Technol B, 2010; 14 (6): 1365-1377 . : http://dx.doi.org/10.1109/TITB.2010.2049268
  • Boeker M, Schober D, Schulz S, Balzer F: Ontology of Bio-Medical Educational Objectives (OBEO): ein Vorschlag für eine Ontologie medizinischer Lernziele. A proposal for an Ontology of Bio-Medical Educational Objectives (OBEO). GMS German Medical Science (GMS Medizinische Informatik, Biometrie und Epidemiologie), 2010; 6 (2) (online): DOC11. : http://www.egms.de/en/journals/mibe/2010-6/mibe000111.shtml (download: http://www.egms.de/pdf/journals/mibe/2010-6/mibe000111.pdf)
  • Brinkman RR, Courtot M, Derom D, Fostel JM, He Y, Lord P, Malone J, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone SA, Soldatova LN, Stoeckert CJ Jr, Turner JA, Zheng J, OBI Consortium: Modeling biomedical experimental processes with OBI. J Biomed Semantics, 2010; 1 Suppl. 1 (online): S7. : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2903726/
  • Daumke P, Schulz S, Müller ML, Dzeyk W, Prinzen L, Pacheco EJ, Secco Cancian P, Nohama P, Markó K: Subword-based Semantic Retrieval of Clinical and Bibliographic Documents. Method Inform Med, 2010; 49 (2): 141-147. : http://dx.doi.org/10.3414/ME9303
  • Oleynik M, Nohama P, Cancian PS, Schulz S: Performance analysis of a POS tagger applied to discharge summaries in Portuguese. Stud Health Technol Inform, 2010; 160 (Pt 2): 959-963. : http://booksonline.iospress.nl/Content/View.aspx?piid=17515
  • Ouagne D, Nadah N, Schober D, Choquet R, Teodoro D, Colaert D, Schulz S, Jaulent MC, Daniel C: Ensuring HL7-based information model requirements within an ontology framework. Stud Health Technol Inform, 2010; 160 (Pt 2): 912-916. : http://booksonline.iospress.nl/Content/View.aspx?piid=17505
  • Schober D, Boeker M, Bullenkamp J, Huszka C, Depraetere K, Teodoro D, Nadah N, Choquet R, Daniel C, Schulz S: The DebugIT core ontology: semantic integration of antibiotics resistance patterns. Stud Health Technol Inform, 2010; 160 (Pt 2): 1060-1064. : http://booksonline.iospress.nl/Content/View.aspx?piid=17536
  • Schulz S, Schober D, Daniel C, Jaulent MC: Bridging the semantics gap between terminologies, ontologies, and information models. Stud Health Technol Inform, 2010; 160 (Pt 2): 1000-1004. : http://booksonline.iospress.nl/Content/View.aspx?piid=17524
Vorträge:
  • Jansen L, Schulz S: Grains, Components and Mixtures in Biomedical Ontologies. 2010 (2nd Workshop of Ontologies in Biomedicine and Life Sciences (OBML), Mannheim, 9.-10.9. 2010). : http://www.bioontology.org/node/628
  • Pacheco E, Nohama P, Schulz S: Modelo para codificação de narrativas clínicas para uma ontologia de domínio, utilizando a SNOMED CT. 2010 (XII Congresso Brasileiro de Informática na Saúde, Porto de Galinhas, Brasil, 18.-22.10.2010). : http://www.itarget.com.br/newclients/cbis2010.com.br/2009/
  • Peters AC, Oleynik M, Pacheco EJ, Cabral Moro CM, Schulz S, Nohama P: Elaboração de um Corpus Médico baseado em Narrativas Clínicas contidas em Sumários de Alta Hospitalar. 2010 (XII Congresso Brasileiro de Informática na Saúde, Porto de Galinhas, Brasil, 18.-22.10.2010). : http://www.itarget.com.br/newclients/cbis2010.com.br/2009/
  • Schober D, Boeker M: Ontology Simplification: new buzzword or real need? 2010 (2nd Workshop of Ontologies in Biomedicine and Life Sciences (OBML), Mannheim, 9.-10.9. 2010). : http://www.bioontology.org/node/628
  • Schober D, Boeker M, Schulz S, Tudose I: Developing DCO: The DebugIT Core Ontology for Antibiotics Resistence Modelling. 2010 (Fourth International Symposium on Semantic Mining in Biomedicine (SMBM), 25th -26th October, 2010). : http://www.smbm.eu/
  • Schober D, Raufie D, Boeker M, Schulz S: Pre-coordination vs. post-coordination: different ontology engineering requirements and patterns. 2010 (2nd ECAI Workshop on Knowledge Representation for Health Care (KR4HC). Lissabon, 16.-20.8.2010). : http://ecai2010.appia.pt/
  • Schulz S: Prozesse und Funktionen in biomedizinischen Ontologien. 2010 (OntoCell, Zentrum für Logik und Wissenschaftsgeschichte, Universität Rostock, 23.3.2010). : http://www.iph.uni-rostock.de/Bioprozesse.832.0.html
  • Schulz S: Automatic Encoding of Clinical Documents using SNOMED CT. 2010 (Institutionen för svenska språket, Göteborgs universitet, 7.10.2010). : http://www.svenska.gu.se/
  • Schulz S: Biomedical Classifications and Ontologies. 2010 (Workshop on Ontological Developments of the International Classification of Functioning, Disabilities and Health (ICF). Venedig, Italy, 28. 5. 2010.).
  • Schulz S: Codificación automatizada de documentos clínicos. 2010 (Universität Murcia, Spanien, 16.6.2010.).
  • Schulz S: Representation of Chemicals in Biomedical Terminologies. 2010 (2nd CHEBI User Group Workshop 2010. 23-24 June 2010. EMBL-EBI, Hinxton, Cambridge). : http://www.ebi.ac.uk/training/onsite/CHEBI_230610.html
  • Schulz S: O ecosistema translacional. 2010 (XII Congresso Brasileiro de Informática na Saúde, Porto de Galinhas, Brasil, 18.-22.10.2010). : http://www.itarget.com.br/newclients/cbis2010.com.br/2009/
Konferenzbeiträge:
  • Hastings J, Steinbeck C, Batchelor C, Schulz S: What are chemical structures and their relations? Frontiers in Artificial Intelligence and Applications, 2010; 209: 257-270 (Sixth International Conference (FOIS 2010), Toronto), Galton A, Mizoguchi R (Hrsg). : http://dx.doi.org/10.3233/978-1-60750-535-8-257
  • Hastings J, Steinbeck C, Jansen L, Schulz S: Substance concentrations as conditions for the realization of dispositions. 2010 (The 13th Annual Bio-Ontologies Meeting, Boston MA). : http://linkshrink.de/17716/
  • Schulz S, Raufie D, Boeker M: Scalable representations of diseases in biomedical ontologies 2010 (The 13th Annual Bio-Ontologies Meeting, Boston MA). : http://linkshrink.de/17716/
  • Schulz S, Schober S, Tudose I, Stenzhorn H: The Pitfalls of Thesaurus Ontologization – the Case of the NCI Thesaurus. AMIA Annu Symp Proc, 2010: 727-731 (AMIA 2010 Annual Symposium, Washington D.C. USA, November 2010). : http://proceedings.amia.org/127gtf/1